KEGG 'MEMBER' keyword without special parsing & T/nt numbers

[nc1m]

Hi,

the following warning appeared while using the library: WARNING [bioservices:keggparser:119]: Found keyword MEMBER, which has not special parsing for now. please report this issue with the KEGG identifier (DG01245 DGroup) into github.com/bioservices. Thanks T.C.

Also the get method does not seem to work with T and nt numbers:

kegg = KEGG()  
kegg.get('T01001')  
=> WARNING [bioservices.KEGG:596]:  status is not ok with Bad Request

https://www.kegg.jp/entry/T01001 and

kegg = KEGG()  
kegg.get('nt06214')  
=> WARNING [bioservices.KEGG:596]:  status is not ok with Not Found

https://www.kegg.jp/entry/nt06214

Thanks

[cokelaer]

Looks like when using the get method, some entries needs to be annotated. This is the case for T01001, which is a genome, and nt06214, which is a network. So, you must use:

kegg.get('gn:T01001')

kegg.get('network:nt06214')

I have updated the documentation that will appear here https://bioservices.readthedocs.io/en/main/references.html#bioservices.kegg.KEGG.get

[cokelaer]

For the network case, you will need a new version (1.10.3) that should be released in a few days

[nc1m]

Thanks for the help and your work!