Validate all current recipe wit new framework - Githubissues

cokelaer / damona

singularity environment manager (application to NGS and bioinformatics)

https://damona.readthedocs.io

BSD 3-Clause "New" or "Revised" License

5 stars 2 forks source link

Validate all current recipe wit new framework #12

Closed cokelaer closed 2 years ago

cokelaer commented 2 years ago

[x] art
[x] fastqc
[x] hisat2
[x] phantompeakqualtools
[x] salmon
[x] trf
[x] bcl2fastq CANNOT be included per se
[x] damona
[x] flye
[x] prokka
[x] rnadiff
[x] seqtk
[x] sequana_perl_tools
[x] bowtie2
[x] gffread
[x] kraken
[x] rnaseqc
[x] sequana
[x] sequana_tools
[x] ucsc
[x] canu
[x] falco
[x] graphviz
[x] minimap2
[x] quast
[x] rtools

environments to be dealt with later:

[x] conda
[ ] R
[ ] ubuntu

not included because redundant or was used for testing

[x] deseq2
[x] sequana_fastqc