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cole-trapnell-lab / cicero-release

https://cole-trapnell-lab.github.io/cicero-release/
MIT License
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error with run_cicero function #102

Open lucyu2668 opened 6 months ago

lucyu2668 commented 6 months ago

when I run the function: conns<-run_cicero(cicero_cds,chromosome_length) R returen as: [1] "Starting Cicero" [1] "Calculating distance_parameter value" Error: logical subscript contains NAs In addition: Warning messages: 1: In estimate_distance_parameter(cds, window = window, maxit = 100, : NAs introduced by coercion 2: In estimate_distance_parameter(cds, window = window, maxit = 100, : NAs introduced by coercion

What does this mean? How can I fix the problem?

hpliner commented 2 months ago

Apologies for the long delay. Are your accessible sites in the format 'chr_bp1_bp2'? Please provide the head of your input matrix if this is still a function - the output to head(fData(cicero_cds))