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cole-trapnell-lab / cicero-release

https://cole-trapnell-lab.github.io/cicero-release/
MIT License
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ERROR:duplicate 'row.names' are not allowed #22

Closed yxaxaxa closed 5 years ago

yxaxaxa commented 5 years ago

Dear Sir: I was trying to use Cicero to get gene activity score, however, when I follow the tutorial in the website, I encounter an error, when I began to process make_cicero_cds module, after input all the variable like tutorial and begin the chunk , the console report like this: Overlap QC metrics: Cells per bin: 50 Maximum shared cells bin-bin: 44 Mean shared cells bin-bin: 3.82782937736498 Median shared cells bin-bin: 0 NAs introduced by coercionnon-unique value when setting 'row.names': 'Peak'Error in .rowNamesDF<-(x, value = value) : duplicate 'row.names' are not allowed

I was wondering which step I was wrong, as I checked all the annotate files and peakinfo, there is no duplicate index Could you please help me to find how can I check the duplicate row or how to fix this issue? eager for your help

                                                                                                                                 thanks
hpliner commented 5 years ago

Apologies for the delay. Can you please post the output of traceback() after running the above? Also please post the exact call you are making and if possible the heads of the inputs.

yxaxaxa commented 5 years ago

Sorry for late reply, I have just check the error which shows that I may have duplicated rows so I redo a qulity check to my raw data, and eliminate some poor quality peak, it's now successfully entered to next step thanks