Error in reduce dimension part of trajectory analysis

cole-trapnell-lab / cicero-release

MIT License

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Closed smanne07 closed 5 years ago

smanne07 commented 5 years ago

Hi Hannah, Thank you for creating this useful package for scATACseq data.

I have created a celldataset going through the Cicero method and used the same object for running trajectory analysis and got the following error

Error in as.igraph.vs(graph, nodes) : Invalid vertex names Calls: reduceDimension ... learnGraph -> project2MST -> neighborhood -> as.igraph.vs

Can you help figuring out what might be causing this issue?

Thank you Sasi

hpliner commented 5 years ago

Hi Sasi,

Can you please:

post the call that's erroring
post the traceback of the error (run traceback() after the error comes up)
let me know if you've tried running the example on the website and if the same error occurred

Thanks, hannah

hpliner commented 5 years ago

Please reopen with the requested information if this is still an issue!

Best, Hannah