I have been running into the following message when running the
conservation <- UcscTrack(genome = "mm10" ..... script.
The error reads as follows:
Error in UcscTrack(genome = "mm10", chromosome = "chr19", track = "Conservation", :
Error fetching data from UCSC
In addition: Warning messages:
1: In matrix(as.numeric(unlist(split_lines)), nrow = 2) :
NAs introduced by coercion
2: In matrix(as.numeric(unlist(split_lines)), nrow = 2) :
data length [200005] is not a sub-multiple or multiple of the number of rows [2]
3: In UcscTrack(genome = "mm10", chromosome = "chr19", track = "Conservation", :
Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") :
In range 100001: at least two out of 'start', 'end', and 'width', must
be supplied.
Any ideas on how to address or override these warning to get the correct output?
Thanks!
sylestiel
commented
4 years ago
Hi,
I have been running into the following message when running the conservation <- UcscTrack(genome = "mm10" ..... script.
The error reads as follows: Error in UcscTrack(genome = "mm10", chromosome = "chr19", track = "Conservation", : Error fetching data from UCSC In addition: Warning messages: 1: In matrix(as.numeric(unlist(split_lines)), nrow = 2) : NAs introduced by coercion 2: In matrix(as.numeric(unlist(split_lines)), nrow = 2) : data length [200005] is not a sub-multiple or multiple of the number of rows [2] 3: In UcscTrack(genome = "mm10", chromosome = "chr19", track = "Conservation", : Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") : In range 100001: at least two out of 'start', 'end', and 'width', must be supplied.
Any ideas on how to address or override these warning to get the correct output? Thanks!