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cole-trapnell-lab / cicero-release

https://cole-trapnell-lab.github.io/cicero-release/
MIT License
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Error message when running generate_ccans() #62

Closed chent5 closed 4 years ago

chent5 commented 4 years ago

Thanks a lot for developing this package.

After I computed coaccessibility cluster by cluster using run_cicero() and got the conns object. I got an error message when running generate_ccans() as below: "Error in make_ccan_graph(connections_df, coaccess_cutoff = coaccess_cutoff) : No connections for graph"

The above error message only occurred in some of the clusters, not all of them. I am confused about what cause this error? Could you help to solve this problem? Thank you so much!

hpliner commented 4 years ago

Answered in the user group here: https://groups.google.com/g/cicero-users/c/rE73PyjHTEc