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cole-trapnell-lab / cicero-release

https://cole-trapnell-lab.github.io/cicero-release/
MIT License
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run_cicero Peak1 include NA #92

Closed zhangqc723 closed 2 months ago

zhangqc723 commented 1 year ago

image When I check the result of run_cicero, I found the Peak1 or Peak2 include NA. Why? Tkans!

zhangqc723 commented 1 year ago

Now, I met this error when I run this code _"ccans <- generateccans(conns)" Error in make_ccan_graph(connections_df, coaccess_cutoff = coaccess_cutoff) : No connections for graph But, this code _ccans <- generate_ccans(conns,coaccess_cutoffoverride = 0.1) could be run enen if coaccess_cutoff_override was set 0.9.

hpliner commented 1 year ago

Hello, I'm going to need more info to look into this. Are any of your input peaks NA? Do they all follow the same chr-bp1-bp2 pattern?

hpliner commented 2 months ago

Closing from lack of activity. Please reopen if still an issue