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cole-trapnell-lab / cicero

MIT License
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Addmetada to cicero object #16

Closed vfriver closed 2 years ago

vfriver commented 2 years ago

Dear, I am trying to add metadata to cicero object but I can not add

Code>

metadad <- read.csv( file = "/metadata.csv", header = TRUE, row.names = 1 )

cds <- load_mm_data(mat_path = "/matrix.mtx", feature_anno_path = "/features.tsv", cell_anno_path = "/barcodes.tsv", cell_metadata = metadad).

The final object does not have the colData with metadata.

Can you help me please..

hpliner commented 2 years ago

Hello, The function load_mm_data does not have an argument "cell_metadata". You'll need to load the cds without the metadata and then add to the colData either by merging or using cbind (if the rows are in the right order).