Question for trajector analysis

cole-trapnell-lab / cicero

MIT License

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Question for trajector analysis #7

Closed crushseven-7 closed 4 years ago

crushseven-7 commented 4 years ago

Hi, Thank you for your wonderful software. Currently I am working on scATAC-seq data trajectory analysis. After I prepared input_cds and run estimate_size_factors() function, I got this error: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function 'counts' for signature '"CellDataSet"' How shall I modify the input cds to avoid this error?

Thank you, Best, Yan

hpliner commented 4 years ago

Duplicate of https://github.com/cole-trapnell-lab/cicero-release/issues/46