search

cole-trapnell-lab / cufflinks

Boost Software License 1.0
312 stars 116 forks source link

build failure biascorrection.h:18:10: fatal error: boost/tr1/unordered_map.hpp: No such file or directory #105

Open greyltc opened 6 years ago

greyltc commented 6 years ago 
./autogen.sh: line 19: ./version.sh: No such file or directory
configure.ac:39: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_system.m4:33: AX_BOOST_SYSTEM is expanded from...
configure.ac:39: the top level
configure.ac:40: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_serialization.m4:33: AX_BOOST_SERIALIZATION is expanded from...
configure.ac:40: the top level
configure.ac:41: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from...
configure.ac:41: the top level
configure.ac:39: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_system.m4:33: AX_BOOST_SYSTEM is expanded from...
configure.ac:39: the top level
configure.ac:40: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_serialization.m4:33: AX_BOOST_SERIALIZATION is expanded from...
configure.ac:40: the top level
configure.ac:41: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from...
configure.ac:41: the top level
configure.ac:39: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_system.m4:33: AX_BOOST_SYSTEM is expanded from...
configure.ac:39: the top level
configure.ac:40: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_serialization.m4:33: AX_BOOST_SERIALIZATION is expanded from...
configure.ac:40: the top level
configure.ac:41: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from...
configure.ac:41: the top level
configure.ac:39: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_system.m4:33: AX_BOOST_SYSTEM is expanded from...
configure.ac:39: the top level
configure.ac:40: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_serialization.m4:33: AX_BOOST_SERIALIZATION is expanded from...
configure.ac:40: the top level
configure.ac:41: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from...
configure.ac:41: the top level
configure.ac:39: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_system.m4:33: AX_BOOST_SYSTEM is expanded from...
configure.ac:39: the top level
configure.ac:40: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_serialization.m4:33: AX_BOOST_SERIALIZATION is expanded from...
configure.ac:40: the top level
configure.ac:41: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from...
../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from...
../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from...
../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from...
ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from...
configure.ac:41: the top level
configure.ac:35: installing 'build-aux/ar-lib'
configure.ac:31: installing 'build-aux/compile'
configure.ac:39: installing 'build-aux/config.guess'
configure.ac:39: installing 'build-aux/config.sub'
configure.ac:16: installing 'build-aux/install-sh'
configure.ac:16: installing 'build-aux/missing'
src/Makefile.am:113: warning: source file 'locfit/adap.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled.  For now, the corresponding output
automake: object file(s) will be placed in the top-level directory.  However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am:113: warning: source file 'locfit/ar_funs.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/arith.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/band.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/c_args.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/c_plot.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/cmd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dens_haz.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dens_int.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dens_odi.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/density.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/dist.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_atree.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_interp.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_kdtre.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_main.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/ev_trian.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/family.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/fitted.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/frend.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/help.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_dercor.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_fitfun.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_robust.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lf_vari.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lfd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/lfstr.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/linalg.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/locfit.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_chol.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_eigen.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_jacob.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/m_max.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/makecmd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/math.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/minmax.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/nbhd.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/pcomp.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/pout.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/preplot.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/random.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/readfile.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/scb.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/scb_cons.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/simul.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/solve.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/startlf.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/strings.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/vari.cpp' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/wdiag.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am:113: warning: source file 'locfit/weight.c' is in a subdirectory,
src/Makefile.am:113: but option 'subdir-objects' is disabled
src/Makefile.am: installing 'build-aux/depcomp'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gawk... (cached) gawk
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking whether make sets $(MAKE)... (cached) yes
checking for ranlib... ranlib
checking for ar... ar
checking the archiver (ar) interface... ar
checking for a Python interpreter with version >= 2.4... python
checking for python... /usr/bin/python
checking for python version... 3.7
checking for python platform... linux
checking for python script directory... ${prefix}/lib/python3.7/site-packages
checking for python extension module directory... ${exec_prefix}/lib/python3.7/site-packages
checking for boostlib >= 1.47.0... yes
checking for bamlib... yes
checking build system type... x86_64-pc-linux-gnu
checking whether the Boost::System library is available... yes
checking for exit in -lboost_system... yes
checking for exit in -lboost_system... (cached) yes
checking whether the Boost::Serialization library is available... yes
checking for exit in -lboost_serialization... yes
checking for exit in -lboost_serialization... (cached) yes
checking whether the Boost::Thread library is available... yes
checking for exit in -lboost_thread... yes
checking for exit in -lboost_system... (cached) yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking if zlib is wanted... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... (cached) yes
checking zlib in /usr... ok
checking for eigenlib... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for pid_t... yes
checking for size_t... yes
checking for ptrdiff_t... yes
checking host system type... x86_64-pc-linux-gnu
checking if gcc accepts -m64... yes
checking for struct sysinfo.totalram... yes
checking whether sysctl is declared... yes
checking whether CTL_HW is declared... no
checking whether HW_PHYSMEM is declared... no
checking how to create a pax tar archive... gnutar
checking dependency style of gcc... (cached) gcc3
checking dependency style of g++... (cached) gcc3
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands

-- cufflinks 2.2.1 Configuration Results --
  C++ compiler:        g++ -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024 -m64 -O3  -DNDEBUG  -pthread -I/usr/include -I/usr/include -I/usr/include/eigen3  -L/usr/lib -lboost_system
  GCC version:         gcc (GCC) 8.2.1 20180831
  Host System type:    x86_64-pc-linux-gnu
  Install prefix:      /usr
  Install eprefix:     ${prefix}

  See config.h for further configuration information.
  Email <cole@cs.umd.edu> with questions and bug reports.

==> Removing existing $pkgdir/ directory...
==> Starting build()...
make  all-recursive
make[1]: Entering directory '/home/[redacted]/git/cufflinks/src/cufflinks-2.2.1'
Making all in src
make[2]: Entering directory '/home/[redacted]/git/cufflinks/src/cufflinks-2.2.1/src'
g++ -DHAVE_CONFIG_H -I. -I..  -I../src  -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024 -m64 -O3  -DNDEBUG  -pthread -I/usr/include -I/usr/include -I/usr/include/eigen3 -MT cufflinks.o -MD -MP -MF .deps/cufflinks.Tpo -c -o cufflinks.o cufflinks.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I../src  -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024 -m64 -O3  -DNDEBUG  -pthread -I/usr/include -I/usr/include -I/usr/include/eigen3 -MT clustering.o -MD -MP -MF .deps/clustering.Tpo -c -o clustering.o clustering.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I../src  -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024 -m64 -O3  -DNDEBUG  -pthread -I/usr/include -I/usr/include -I/usr/include/eigen3 -MT differential.o -MD -MP -MF .deps/differential.Tpo -c -o differential.o differential.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I../src  -I/usr/include  -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024 -m64 -O3  -DNDEBUG  -pthread -I/usr/include -I/usr/include -I/usr/include/eigen3 -MT common.o -MD -MP -MF .deps/common.Tpo -c -o common.o common.cpp
In file included from abundances.h:26,
                 from differential.cpp:20:
biascorrection.h:18:10: fatal error: boost/tr1/unordered_map.hpp: No such file or directory
 #include <boost/tr1/unordered_map.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
greyltc commented 5 years ago

Any chance we can get this PR merged to fix this?

akinerkan commented 5 years ago

i was trying to compile ros for raspbian. when it tries to compile rospack , it complained about same problem. Funny but i fixed this by modifying code. removed tr1 from includes and put boost instead of std::tr1 in code.