Does cufflinks calculate the correlation between replicates provided for analysis? If not, how would you calculate this manually? Since the gene IDs or Cuff IDs do not match between replicates, it's unclear how to align these to correlation FPKM values.
Hi there!
Does cufflinks calculate the correlation between replicates provided for analysis? If not, how would you calculate this manually? Since the gene IDs or Cuff IDs do not match between replicates, it's unclear how to align these to correlation FPKM values.
I appreciate any insight!