I would like to know what is the estimated runtime for RABT algorithm in a human transcriptome with around 50M paired-end reads, running with 24 threads (Intel(R) Xeon(R) CPU E5645 @ 2.40GHz). Right now I'm running cufflinks (RABT) without fragment bias or multiple reads correction and the process lasts more than 3 days!!! I need to process more than 100 samples and with this runtime will last forever...
Hi,
I would like to know what is the estimated runtime for RABT algorithm in a human transcriptome with around 50M paired-end reads, running with 24 threads (Intel(R) Xeon(R) CPU E5645 @ 2.40GHz). Right now I'm running cufflinks (RABT) without fragment bias or multiple reads correction and the process lasts more than 3 days!!! I need to process more than 100 samples and with this runtime will last forever...
Is it normal? am I doing something wrong?
Thanks in advance.