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cole-trapnell-lab / cufflinks

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cufflink doesn't compile with last R version #8

Closed sistemas-scbi closed 9 years ago

sistemas-scbi commented 9 years ago

Hi,

The problem is that in RSQLite the function sqliteQuickSQL has been deprecated, so it cannot be used anymore, and programs that used to work now don't work with an updated R.

So cufflink cannot be installed with the last R version, it says:

Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite' Error: package ‘Gviz’ could not be loaded

Could someone solve that problem ?

Thanks,

Rafael

ctrapnell commented 9 years ago

Cufflinks doesn't run on R. Perhaps you mean CummeRbund?

sistemas-scbi commented 9 years ago

Yes, you are right, sorry for the confusion.