Hi
I need some help with installation on hpc on local account.
Here is the error message. It has been reported earlier by other people. But those solutions didn't work for me. Can you please help. The complete output message is also attached.
Thanks.
checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your ver
errorcufflinks.txt
sion number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation.
when using cufflinks-master from github ; i am getting another error
$ ./configure --prefix=/home/rcf-proj2/hg1/software/cufflinks-2.2.1 --with-boost=/home/rcf-proj2/hg1/software/boost_1_66_0/ --with-eigen=/home/rcf-proj2/hg1/software/eigen/Eigen/ --with-bam=/auto/rcf-proj2/hg1/software/htslib-1.7/home/rcf-proj2/hg1/software/htslib-1.7
configure: WARNING: unrecognized options: --with-eigen
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gawk... (cached) gawk
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking whether make sets $(MAKE)... (cached) yes
checking for ranlib... ranlib
checking for ar... ar
checking the archiver (ar) interface... ar
checking for a Python interpreter with version >= 2.4... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... ${exec_prefix}/lib64/python2.7/site-packages
checking for boostlib >= 1.47.0... yes
checking for htslib or bamlib... yes
checking build system type... x86_64-unknown-linux-gnu
checking whether the Boost::System library is available... yes
checking whether the Boost::Serialization library is available... yes
checking whether the Boost::Filesystem library is available... yes
configure: error: Could not find a version of the library!
Hi I need some help with installation on hpc on local account.
Here is the error message. It has been reported earlier by other people. But those solutions didn't work for me. Can you please help. The complete output message is also attached. Thanks.
checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your ver errorcufflinks.txt sion number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation.
when using cufflinks-master from github ; i am getting another error $ ./configure --prefix=/home/rcf-proj2/hg1/software/cufflinks-2.2.1 --with-boost=/home/rcf-proj2/hg1/software/boost_1_66_0/ --with-eigen=/home/rcf-proj2/hg1/software/eigen/Eigen/ --with-bam=/auto/rcf-proj2/hg1/software/htslib-1.7/home/rcf-proj2/hg1/software/htslib-1.7 configure: WARNING: unrecognized options: --with-eigen checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) gawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking whether make sets $(MAKE)... (cached) yes checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for a Python interpreter with version >= 2.4... python checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/site-packages checking for python extension module directory... ${exec_prefix}/lib64/python2.7/site-packages checking for boostlib >= 1.47.0... yes checking for htslib or bamlib... yes checking build system type... x86_64-unknown-linux-gnu checking whether the Boost::System library is available... yes checking whether the Boost::Serialization library is available... yes checking whether the Boost::Filesystem library is available... yes configure: error: Could not find a version of the library!