cole-trapnell-lab / monocle-release

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num_clusters issue in clusterCells function #481

Open aowisc opened 2 years ago

aowisc commented 2 years ago

I am working in version 2.24 of monocle and when I run the following codes I get a plot with 60+ clusters, as if the num_clusters did not work. I would ideally like to stay in version 2 because I am following up on an older project.

monocle_cds <- clusterCells(monocle_cds, num_clusters = 14) plot_cell_clusters(monocle_cds, color_by = 'as.factor(Cluster)')

Is it just an issue with the version I am running?