Open myshu2017-03-14 opened 1 year ago
Hi, I recently got stuck (for 3 days) while using plot_genes_branched_heatmap in Monocle2. But other data works fine. I ran the following code:
plot_genes_branched_heatmap
library(monocle) cds_data <- readRDS("combined.rds") load("BEAM_res.Rdata") BEAM_res2 <- BEAM_res[order(BEAM_res$qval),] pdf(file="heatmap.pdf") print(plot_genes_branched_heatmap(cds_data[row.names(head(BEAM_res2, 10)),],branch_point = 1,num_clusters = 4,cores =2, use_gene_short_name = TRUE,show_rownames = TRUE,return_heatmap = F)) dev.off()
I would like to ask what is the cause of this problem and how can I send the test data to you?
Hi, I recently got stuck (for 3 days) while using
plot_genes_branched_heatmap
in Monocle2. But other data works fine. I ran the following code:I would like to ask what is the cause of this problem and how can I send the test data to you?