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cole-trapnell-lab / monocle-release

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Eroor to install monocle v2 #507

Open sanskritidey opened 6 months ago

sanskritidey commented 6 months ago

Hie, I'm facing the issue to install the monocle package for version 2.

Install BiocManager if not already done

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")

Install monocle using BiocManager

BiocManager::install("monocle") 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cran.rstudio.com/ Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2 (2023-10-31 ucrt) Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.3.2/library packages: boot, cluster, foreign, lattice, MASS, Matrix, mgcv, nlme, rpart, survival Warning message: package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'monocle'

alanocallaghan commented 6 months ago

This indicates that you already have the latest version of monocle; BiocManager is telling you that your version is the same as or greater than the version available on Bioc