cole-trapnell-lab / monocle3

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monocle3 installation ERROR: lazy loading failed for package ‘monocle’ #475

Open msikder opened 3 years ago

msikder commented 3 years ago

Hello, I am trying to install "monocle" in Rstudio. It shows following errors . Please help me to solve this issues. Thanks

devtools::install_github('cole-trapnell-lab/monocle3', ref="develop")

gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c cigraph/src/AMD/Source/amd.f -o cigraph/src/AMD/Source/amd.o make: gfortran: No such file or directory make: *** [cigraph/src/AMD/Source/amd.o] Error 1 ERROR: compilation failed for package ‘leidenbase’

sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.7

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices [4] utils datasets methods
[7] base

loaded via a namespace (and not attached): [1] rstudioapi_0.13
[2] magrittr_2.0.1
[3] usethis_2.0.0
[4] devtools_2.3.2
[5] pkgload_1.1.0
[6] R6_2.5.0
[7] rlang_0.4.10
[8] fastmap_1.1.0
[9] fansi_0.4.2
[10] tools_4.0.2
[11] pkgbuild_1.2.0
[12] xfun_0.20
[13] sessioninfo_1.1.1
[14] tinytex_0.29
[15] cli_2.2.0
[16] withr_2.4.1
[17] ellipsis_0.3.1
[18] remotes_2.2.0
[19] assertthat_0.2.1
[20] rprojroot_2.0.2
[21] lifecycle_0.2.0
[22] crayon_1.3.4
[23] processx_3.4.5
[24] BiocManager_1.30.10 [25] purrr_0.3.4
[26] callr_3.5.1
[27] fs_1.5.0
[28] ps_1.5.0
[29] curl_4.3
[30] testthat_3.0.1
[31] memoise_2.0.0
[32] glue_1.4.2
[33] cachem_1.0.1
[34] compiler_4.0.2
[35] desc_1.2.0
[36] prettyunits_1.1.1

brgew commented 3 years ago

Hi,

It looks like you haven't installed gfortran. You can get gfortran packages at

https://github.com/fxcoudert/gfortran-for-macOS/releases

brgew commented 3 years ago

Hi, Does this problem persist?