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Error with top_markers function #519

Open zh-zhang1984 opened 3 years ago

zh-zhang1984 commented 3 years ago

I have following error reporting; any ideas for solving this problem?

> monocle_Ne <- estimate_size_factors(monocle_Ne)
> marker_test_res <- top_markers(
+   monocle_Ne, 
+   group_cells_by="integrated_snn_res.0.15")
  |=========================================| 100%, Elapsed 00:02
  |=========================================| 100%, Elapsed 01:11
Error in stats::p.adjust(marker_test_res$lrtest_p_value, method = "bonferroni",  : 
  'list' object cannot be coerced to type 'double'
shah0829 commented 2 years ago

i have go the similar problem, I have Monocle3 version 1.2.9

> marker_test_res_time <- top_markers(mono, group_cells_by="time", reference_cells=1000) |=======================================================================================================| 100%, Elapsed 00:03 |=======================================================================================================| 100%, Elapsed 00:04 Error in stats::p.adjust(marker_test_res$lrtest_p_value, method = "bonferroni", : 'list' object cannot be coerced to type 'double' can anyone please guide me.... how to solve this.?

TauHHCC commented 1 year ago

Hi, has this problem been solved? I met this issue now...

HappinessEricst commented 1 month ago

Hi please i just met this same issue and i would like to ask if this has been fixed.

shah0829 commented 1 month ago

Hi please i just met this same issue and i would like to ask if this has been fixed.

I commented on this issue cople years ago but haven't followed up since. At the time, I was experiencing the same problem with the top_markers function. However, I do not remember the workaround, but if i get the time to retrace i will definatly update.

HappinessEricst commented 1 month ago

Hi please i just met this same issue and i would like to ask if this has been fixed.

I commented on this issue cople years ago but haven't followed up since. At the time, I was experiencing the same problem with the top_markers function. However, I do not remember the workaround, but if i get the time to retrace i will definatly update.

thank you i will grateful if you can retrace the solution. Will be hopeful for a positive feedback. Thank you