spData

[tanasa]

Do the functions in Monocle3 (eg graph_test() )requires the package spData ?.

When I am trying to install spData, the message I do receive is :

make: *** [geos_methods.o] Error 1
ERROR: compilation failed for package ‘terra’
* removing ‘/home/btanasa/.R/terra’
ERROR: dependency ‘terra’ is not available for package ‘raster’
* removing ‘/home/btanasa/.R/raster’
ERROR: dependency ‘raster’ is not available for package ‘spData’
* removing ‘/home/btanasa/.R/spData’
ERROR: dependency ‘spData’ is not available for package ‘spatialreg’
* removing ‘/home/btanasa/.R/spatialreg’

The downloaded source packages are in
    ‘/local/scratch/btanasa/slrmtmp.28511097/Rtmp2S7dNY/downloaded_packages’
Warning messages:
1: In install.packages("spData", dependencies = TRUE) :
  installation of package ‘terra’ had non-zero exit status
2: In install.packages("spData", dependencies = TRUE) :
  installation of package ‘raster’ had non-zero exit status
3: In install.packages("spData", dependencies = TRUE) :
  installation of package ‘spData’ had non-zero exit status
4: In install.packages("spData", dependencies = TRUE) :
  installation of package ‘spatialreg’ had non-zero exit status
> knn_test_res <- graph_test(cds,  neighbor_graph="knn", cores=7)
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  there is no package called ‘spData’

[chairchild]

you should install dependent package terra and raster. As the information, your terra was not installed correctly. you can check the erro log, and installed what they need (maybe gdal-lib or PROJ).

[brgew]

Hi,

Is this still a problem?

Thank you, Brent