Error during installation of monocle3

Hi! I have an issue during the installation of monocle3. Please see the error message below.

g++ -std=gnu++11 -shared -s -o leidenbase.dll tmp.def rigraph/src/community_leiden.o rigraph/src/igraph_buckets.o rigraph/src/sparsemat.o rigraph/src/plfit/error.o rigraph/src/plfit/sampling.o rigraph/src/plfit/gss.o rigraph/src/plfit/platform.o rigraph/src/plfit/mt.o rigraph/src/plfit/rbinom.o rigraph/src/plfit/kolmogorov.o rigraph/src/plfit/plfit.o rigraph/src/plfit/hzeta.o rigraph/src/plfit/lbfgs.o rigraph/src/plfit/options.o rigraph/src/glet.o rigraph/src/attributes.o rigraph/src/rinterface.o rigraph/src/scan.o rigraph/src/forestfire.o rigraph/src/igraph_hashtable.o rigraph/src/foreign-graphml.o rigraph/src/cohesive_blocks.o rigraph/src/foreign-pajek-lexer.o rigraph/src/layout_fr.o rigraph/src/igraph_grid.o rigraph/src/flow.o rigraph/src/scg_approximate_methods.o rigraph/src/centrality.o rigraph/src/hacks.o rigraph/src/cliques.o rigraph/src/topology.o rigraph/src/other.o rigraph/src/cocitation.o rigraph/src/paths.o rigraph/src/init.o rigraph/src/qsort_r.o rigraph/src/cattributes.o rigraph/src/igraph_fixed_vectorlist.o rigraph/src/eigen.o rigraph/src/foreign-pajek-parser.o rigraph/src/basic_query.o rigraph/src/microscopic_update.o rigraph/src/version.o rigraph/src/uuid/clear.o rigraph/src/uuid/pack.o rigraph/src/uuid/compare.o rigraph/src/uuid/isnull.o rigraph/src/uuid/unparse.o rigraph/src/uuid/copy.o rigraph/src/uuid/R.o rigraph/src/uuid/gen_uuid.o rigraph/src/uuid/parse.o rigraph/src/uuid/unpack.o rigraph/src/cores.o rigraph/src/lapack.o rigraph/src/statusbar.o rigraph/src/sir.o rigraph/src/SuiteSparse_config/SuiteSparse_config.o rigraph/src/decomposition.o rigraph/src/st-cuts.o rigraph/src/sugiyama.o rigraph/src/embedding.o rigraph/src/vector.o rigraph/src/community.o rigraph/src/gml_tree.o rigraph/src/foreign-dl-lexer.o rigraph/src/matching.o rigraph/src/scg_utils.o rigraph/src/interrupt.o rigraph/src/scg_optimal_method.o rigraph/src/igraph_cliquer.o rigraph/src/progress.o rigraph/src/lazyeval.o rigraph/src/complex.o rigraph/src/coloring.o rigraph/src/dotproduct.o rigraph/src/array.o rigraph/src/qsort.o rigraph/src/memory.o rigraph/src/scg.o rigraph/src/scg_kmeans.o rigraph/src/fortran_intrinsics.o rigraph/src/scg_exact_scg.o rigraph/src/bfgs.o rigraph/src/arpack.o rigraph/src/cs/cs_scc.o rigraph/src/cs/cs_dropzeros.o rigraph/src/cs/cs_malloc.o rigraph/src/cs/cs_norm.o rigraph/src/cs/cs_lu.o rigraph/src/cs/cs_symperm.o rigraph/src/cs/cs_lusol.o rigraph/src/cs/cs_entry.o rigraph/src/cs/cs_ipvec.o rigraph/src/cs/cs_load.o rigraph/src/cs/cs_house.o rigraph/src/cs/cs_permute.o rigraph/src/cs/cs_leaf.o rigraph/src/cs/cs_dupl.o rigraph/src/cs/cs_utsolve.o rigraph/src/cs/cs_scatter.o rigraph/src/cs/cs_randperm.o rigraph/src/cs/cs_sqr.o rigraph/src/cs/cs_cholsol.o rigraph/src/cs/cs_usolve.o rigraph/src/cs/cs_fkeep.o rigraph/src/cs/cs_schol.o rigraph/src/cs/cs_happly.o rigraph/src/cs/cs_pvec.o rigraph/src/cs/cs_updown.o rigraph/src/cs/cs_add.o rigraph/src/cs/cs_spsolve.o rigraph/src/cs/cs_qr.o rigraph/src/cs/cs_ereach.o rigraph/src/cs/cs_droptol.o rigraph/src/cs/cs_qrsol.o rigraph/src/cs/cs_print.o rigraph/src/cs/cs_reach.o rigraph/src/cs/cs_util.o rigraph/src/cs/cs_amd.o rigraph/src/cs/cs_counts.o rigraph/src/cs/cs_multiply.o rigraph/src/cs/cs_lsolve.o rigraph/src/cs/cs_transpose.o rigraph/src/cs/cs_dfs.o rigraph/src/cs/cs_post.o rigraph/src/cs/cs_compress.o rigraph/src/cs/cs_pinv.o rigraph/src/cs/cs_cumsum.o rigraph/src/cs/cs_etree.o rigraph/src/cs/cs_maxtrans.o rigraph/src/cs/cs_dmperm.o rigraph/src/cs/cs_ltsolve.o rigraph/src/cs/cs_chol.o rigraph/src/cs/cs_tdfs.o rigraph/src/cs/cs_gaxpy.o rigraph/src/foreign-lgl-lexer.o rigraph/src/foreign.o rigraph/src/components.o rigraph/src/operators.o rigraph/src/mixing.o rigraph/src/fast_community.o rigraph/src/igraph_heap.o rigraph/src/separators.o rigraph/src/random.o rigraph/src/layout_dh.o rigraph/src/type_indexededgelist.o rigraph/src/foreign-gml-lexer.o rigraph/src/blas.o rigraph/src/structure_generators.o rigraph/src/igraph_stack.o rigraph/src/zeroin.o rigraph/src/lad.o rigraph/src/bipartite.o rigraph/src/triangles.o rigraph/src/iterators.o rigraph/src/foreign-ncol-parser.o rigraph/src/rinterface_extra.o rigraph/src/atlas.o rigraph/src/adjlist.o rigraph/src/foreign-dl-parser.o rigraph/src/foreign-gml-parser.o rigraph/src/layout_kk.o rigraph/src/conversion.o rigraph/src/layout_gem.o rigraph/src/random_walk.o rigraph/src/vector_ptr.o rigraph/src/optimal_modularity.o rigraph/src/igraph_estack.o rigraph/src/structural_properties.o rigraph/src/bigint.o rigraph/src/sbm.o rigraph/src/motifs.o rigraph/src/dqueue.o rigraph/src/bignum.o rigraph/src/feedback_arc_set.o rigraph/src/math.o rigraph/src/lsap.o rigraph/src/cliquer/cliquer_graph.o rigraph/src/cliquer/reorder.o rigraph/src/cliquer/cliquer.o rigraph/src/igraph_psumtree.o rigraph/src/visitors.o rigraph/src/igraph_error.o rigraph/src/types.o rigraph/src/games.o rigraph/src/foreign-ncol-lexer.o rigraph/src/layout.o rigraph/src/igraph_trie.o rigraph/src/matrix.o rigraph/src/foreign-lgl-parser.o rigraph/src/distances.o rigraph/src/igraph_strvector.o rigraph/src/igraph_set.o rigraph/src/spectral_properties.o rigraph/src/maximal_cliques.o rigraph/src/igraph_marked_queue.o rigraph/src/heap.o rigraph/src/spanning_trees.o rigraph/src/spmatrix.o rigraph/src/glpk_support.o rigraph/src/dsesrt.o rigraph/src/dneigh.o rigraph/src/dvout.o rigraph/src/dngets.o rigraph/src/dnconv.o rigraph/src/dnaitr.o rigraph/src/dsgets.o rigraph/src/dnaup2.o rigraph/src/dlaqrb.o rigraph/src/wrap.o rigraph/src/dsortc.o rigraph/src/dsconv.o rigraph/src/dsaup2.o rigraph/src/second.o rigraph/src/dseupd.o rigraph/src/dstats.o rigraph/src/dnaupd.o rigraph/src/dseigt.o rigraph/src/dneupd.o rigraph/src/dsortr.o rigraph/src/dsaupd.o rigraph/src/dgetv0.o rigraph/src/dsaitr.o rigraph/src/dsapps.o rigraph/src/dmout.o rigraph/src/dnapps.o rigraph/src/dstqrb.o rigraph/src/dstatn.o rigraph/src/ivout.o rigraph/src/gengraph_random.o rigraph/src/clustertool.o rigraph/src/drl_layout_3d.o rigraph/src/DensityGrid.o rigraph/src/pottsmodel_2.o rigraph/src/prpack/prpack_preprocessed_scc_graph.o rigraph/src/prpack/prpack_result.o rigraph/src/prpack/prpack_preprocessed_gs_graph.o rigraph/src/prpack/prpack_preprocessed_schur_graph.o rigraph/src/prpack/prpack_igraph_graph.o rigraph/src/prpack/prpack_utils.o rigraph/src/prpack/prpack_base_graph.o rigraph/src/prpack/prpack_solver.o rigraph/src/prpack/prpack_preprocessed_ge_graph.o rigraph/src/simpleraytracer/Ray.o rigraph/src/simpleraytracer/Point.o rigraph/src/simpleraytracer/Light.o rigraph/src/simpleraytracer/Shape.o rigraph/src/simpleraytracer/Color.o rigraph/src/simpleraytracer/Sphere.o rigraph/src/simpleraytracer/RIgraphRay.o rigraph/src/simpleraytracer/RayTracer.o rigraph/src/simpleraytracer/unit_limiter.o rigraph/src/simpleraytracer/RayVector.o rigraph/src/simpleraytracer/Triangle.o rigraph/src/walktrap_communities.o rigraph/src/gengraph_graph_molloy_optimized.o rigraph/src/DensityGrid_3d.o rigraph/src/gengraph_powerlaw.o rigraph/src/drl_parse.o rigraph/src/walktrap_heap.o rigraph/src/gengraph_box_list.o rigraph/src/gengraph_degree_sequence.o rigraph/src/drl_graph_3d.o rigraph/src/degree_sequence.o rigraph/src/gengraph_graph_molloy_hash.o rigraph/src/drl_graph.o rigraph/src/walktrap_graph.o rigraph/src/prpack.o rigraph/src/drl_layout.o rigraph/src/gengraph_mr-connected.o rigraph/src/walktrap.o rigraph/src/NetRoutines.o rigraph/src/NetDataTypes.o rigraph/src/bliss.o rigraph/src/igraph_hrg.o rigraph/src/infomap_Node.o rigraph/src/infomap_Greedy.o rigraph/src/igraph_hrg_types.o rigraph/src/infomap.o rigraph/src/infomap_FlowGraph.o rigraph/src/bliss/bliss_heap.o rigraph/src/bliss/utils.o rigraph/src/bliss/defs.o rigraph/src/bliss/orbit.o rigraph/src/bliss/graph.o rigraph/src/bliss/partition.o rigraph/src/bliss/uintseqhash.o igraph_rinterface.o leidenFindPartitionR2C.o leidenFindPartition.o leidenalg/src/Optimiser.o leidenalg/src/SignificanceVertexPartition.o leidenalg/src/ModularityVertexPartition.o leidenalg/src/LinearResolutionParameterVertexPartition.o leidenalg/src/MutableVertexPartition.o leidenalg/src/ResolutionParameterVertexPartition.o leidenalg/src/CPMVertexPartition.o leidenalg/src/RBERVertexPartition.o leidenalg/src/RBConfigurationVertexPartition.o leidenalg/src/SurpriseVertexPartition.o leidenalg/src/GraphHelper.o -L/mingw64/lib -lxml2 -lz -liconv -lws2_32 -liconv -lz -lws2_32 -LC:/tools/ANACON~2/envs/PY38_R~1/lib/R/bin/x64 -lRblas -LC:/tools/ANACON~2/envs/PY38_R~1/lib/R/bin/x64 -lRlapack -lgfortran -lquadmath -lgmp -LC:/tools/ANACON~2/envs/PY38_R~1/lib/R/bin/x64 -lR C:/rtools40/ucrt64/bin/../lib/gcc/x86_64-w64-mingw32/10.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find -lxml2 collect2.exe: error: ld returned 1 exit status no DLL was created ERROR: compilation failed for package 'leidenbase'

removing 'C:/tools/Anaconda3/envs/py38_r40_monocle/Lib/R/library/leidenbase' [I 12:58:02.204 NotebookApp] Saving file at /Beatriz_Carreno_Mutation_Beatriz_2017_2/Untitled.ipynb

To Reproduce devtools::install_github('cole-trapnell-lab/leidenbase')

Screenshots

sessionInfo(): Run sessionInfo() in R and post the output R version 4.0.5 (2021-03-31) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] pillar_1.7.0 compiler_4.0.5 BiocManager_1.30.18 [4] prettyunits_1.1.1 base64enc_0.1-3 remotes_2.4.2
[7] tools_4.0.5 testthat_3.1.3 digest_0.6.29
[10] pkgbuild_1.3.1 uuid_1.1-0 pkgload_1.2.4
[13] jsonlite_1.8.0 evaluate_0.15 memoise_2.0.1
[16] lifecycle_1.0.1 rlang_1.0.2 IRdisplay_1.1
[19] cli_3.2.0 curl_4.3.2 IRkernel_1.3
[22] fastmap_1.1.0 repr_1.1.4 withr_2.5.0
[25] desc_1.4.1 fs_1.5.2 vctrs_0.4.1
[28] devtools_2.4.3 rprojroot_2.0.3 glue_1.6.2
[31] R6_2.5.1 processx_3.5.3 fansi_1.0.3
[34] sessioninfo_1.2.2 pbdZMQ_0.3-7 purrr_0.3.4
[37] callr_3.7.0 magrittr_2.0.3 usethis_2.1.5
[40] ps_1.6.0 ellipsis_0.3.2 htmltools_0.5.2
[43] utf8_1.2.2 cachem_1.0.6 crayon_1.5.1
[46] brio_1.1.3

cole-trapnell-lab / monocle3

Error during installation of monocle3 #598