Monocle3 is not installing because I cannot update Leidenbase, Igraph and Terra

[mrinmay59]

I am using R version 4.1.3

I used the following command to install monocle3

BiocManager::install(version = "3.14") BiocManager::install(c('BiocGenerics', 'DelayedArray', 'DelayedMatrixStats', 'limma', 'lme4', 'S4Vectors', 'SingleCellExperiment', 'SummarizedExperiment', 'batchelor', 'HDF5Array', 'terra', 'ggrastr'))

library(devtools) devtools::install_github('cole-trapnell-lab/monocle3')

During the process I got the following message These packages have more recent versions available. It is recommended to update all of them. Which would you like to update?

1: All
2: CRAN packages only
3: None
4: igraph (1.4.2 -> 1.5.1 ) [CRAN] 5: terra (1.7-23 -> 1.7-39) [CRAN] 6: leidenbase (0.1.18 -> 0.1.25) [CRAN]

I tried updating all. igraph, leidenbase and terra are not updating I tried updating them separately but they are not updating even when I tried this

I keep getting this message

Warning messages: 1: In i.p(...) : installation of package ‘igraph’ had non-zero exit status 2: In i.p(...) : installation of package ‘terra’ had non-zero exit status 3: In i.p(...) : installation of package ‘leidenbase’ had non-zero exit status 4: In i.p(...) : installation of package ‘C:/Users/DELL/AppData/Local/Temp/RtmpcTOL1M/file227035102d03/monocle3_1.3.4.tar.gz’ had non-zero exit status

[szhorvat]

Your R version is outdated, and CRAN no longer offers pre-compiled packages for it. Use R 4.2 or 4.3 in order to get a binary version of igraph, terra, leidenbase.

[mrinmay59]

Hi szhorvat. I updated to r 4.3 and it worked. Thank you. I hope that at this https://cole-trapnell-lab.github.io/monocle3/docs/installation/ they had clearly mentioned this. According to this page the requirement is only 4.1 Thank You once again