cole-trapnell-lab / monocle3

Other
330 stars 100 forks source link

Installation problems with monocle in ubuntu (without sudo rights) #682

Closed klai001 closed 1 year ago

klai001 commented 1 year ago

Hi I'm attempting to install monocle3 into an ubuntu environment (i dont have sudo privileges) but im facing a couple of problems. Current version of R: 4.3.1 what i tried: -installing directly through R via bioconductor with non-zero exit status. -installing monocle3 using devtools::install_github('cole-trapnell-lab/monocle3') but i faced a ton of non-zero exit status from different dependencies.

"ERROR: dependencies ‘ggrastr’, ‘lme4’, ‘spdep’, ‘terra’ are not available for package ‘monocle3’

-also tried bioconda but it has been solving conflicts for the past 4hours

klai001 commented 1 year ago

Updata: bioconda says its successfully installed but i am unable to call it through R in the same conda environment.

klai001 commented 1 year ago

figured out installing all dependencies of dependecies manually