Hi
I'm attempting to install monocle3 into an ubuntu environment (i dont have sudo privileges) but im facing a couple of problems.
Current version of R: 4.3.1
what i tried:
-installing directly through R via bioconductor with non-zero exit status.
-installing monocle3 using devtools::install_github('cole-trapnell-lab/monocle3')
but i faced a ton of non-zero exit status from different dependencies.
"ERROR: dependencies ‘ggrastr’, ‘lme4’, ‘spdep’, ‘terra’ are not available for package ‘monocle3’
removing ‘/home/klai/.conda/envs/r-new/lib/R/library/monocle3’
Warning messages:
1: In i.p(...) : installation of package ‘units’ had non-zero exit status
2: In i.p(...) : installation of package ‘nloptr’ had non-zero exit status
3: In i.p(...) : installation of package ‘Cairo’ had non-zero exit status
4: In i.p(...) : installation of package ‘terra’ had non-zero exit status
5: In i.p(...) : installation of package ‘lme4’ had non-zero exit status
6: In i.p(...) : installation of package ‘sf’ had non-zero exit status
7: In i.p(...) :
installation of package ‘ggrastr’ had non-zero exit status
8: In i.p(...) : installation of package ‘spdep’ had non-zero exit status
9: In i.p(...) :
installation of package ‘/tmp/RtmplbSZwz/file28db3323e83c/monocle3_1.3.4.tar.gz’ had non-zero exit status".
-also tried bioconda but it has been solving conflicts for the past 4hours
Hi I'm attempting to install monocle3 into an ubuntu environment (i dont have sudo privileges) but im facing a couple of problems. Current version of R: 4.3.1 what i tried: -installing directly through R via bioconductor with non-zero exit status. -installing monocle3 using devtools::install_github('cole-trapnell-lab/monocle3') but i faced a ton of non-zero exit status from different dependencies.
"ERROR: dependencies ‘ggrastr’, ‘lme4’, ‘spdep’, ‘terra’ are not available for package ‘monocle3’
-also tried bioconda but it has been solving conflicts for the past 4hours