I upgraded from R/4.3.1 to R/4.3.2 and also upgraded my packages. When I did, I got the following error from UMAP:
Error in irlba::irlba function 'as_cholmod_sparse' not provided by package 'Matrix'
This is a documented problem in the irlba package. The solution is to reinstall irlba from source. It’s also an open issue for Seurat. It appears to have happened when Matrix changed to 1.6-2.
I think we should require a maximum version of irlba in the DESCRIPTION or change the way that this dependency gets installed.
fjh1997
commented
4 months ago
I upgraded from R/4.3.1 to R/4.3.2 and also upgraded my packages. When I did, I got the following error from UMAP:
Error in irlba::irlba function 'as_cholmod_sparse' not provided by package 'Matrix'This is a documented problem in the irlba package. The solution is to reinstall irlba from source. It’s also an open issue for Seurat. It appears to have happened when Matrix changed to 1.6-2.
I think we should require a maximum version of irlba in the
DESCRIPTIONor change the way that this dependency gets installed.