Is it possible to align across multiple discrete batches (alignment_groups) in align_cds? I could be mistaken, but the function appears to modify the PCA from preprocess_cds, overwriting the previous Aligned reduction with no option to modify it instead, thus precluding an iterative approach. Any advice would be greatly appreciated!
Is it possible to align across multiple discrete batches (alignment_groups) in align_cds? I could be mistaken, but the function appears to modify the PCA from preprocess_cds, overwriting the previous Aligned reduction with no option to modify it instead, thus precluding an iterative approach. Any advice would be greatly appreciated!