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cole-trapnell-lab / monocle3

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As much as I'd like to use monocle3, I can't get it on my system. #720

Open simon7073 opened 6 months ago

simon7073 commented 6 months ago

Currently, monocle specifies the R version (>= 4.0.0), but it depends on Matrix, which depends on R(>=4.4.0). This meant that I had to use R 4.4.0, but my system was CentOS, which had an earlier version of the dynamic link library, especially glib, which I couldn't use the newer R(>=4). Although I was able to use conda to install it, conda only provides the highest version (4.3.1).

R's environment dependencies and package dependencies really frustrate me.

ZulfiiaDitto commented 5 months ago

check this issue. https://github.com/cole-trapnell-lab/monocle3/issues/603 I have R version 4.4.0. and I tried to install it via the devtools -> got 2 dependency issue. The way I install it was thought the BiocManager::install("cole-trapnell-lab/monocle3")