Open rfriedman22 opened 3 months ago
The develop branch has been updated to source a $HOME/.monoclerc file on load. However, when I call convert_counts_matrix(cds) with no additional arguments, I get the following error because the matrix_control parameter is an empty list:
$HOME/.monoclerc
convert_counts_matrix(cds)
matrix_control
Error: convert_counts_matrix: invalid matrix_control parameter
I was able to solve it by setting the matrix_control argument to the value set in my rcfile:
convert_counts_matrix(cds, matrix_control = monocle3:::get_global_variable("matrix_control_bpcells_unrestricted"))
I think that this function should look for the global parameter if nothing is specified by the user as input to convert_counts_matrix().
convert_counts_matrix()
The develop branch has been updated to source a
$HOME/.monoclercfile on load. However, when I callconvert_counts_matrix(cds)with no additional arguments, I get the following error because thematrix_controlparameter is an empty list:I was able to solve it by setting the
matrix_controlargument to the value set in my rcfile:I think that this function should look for the global parameter if nothing is specified by the user as input to
convert_counts_matrix().