Using github PAT from envvar GITHUB_PAT. Use gitcreds::gitcreds_set() and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead.
Downloading GitHub repo cole-trapnell-lab/monocle3@HEAD
Error: Failed to install 'monocle3' from GitHub:
Could not find tools necessary to compile a package
Call pkgbuild::check_build_tools(debug = TRUE) to diagnose the problem.
pkgbuild::check_build_tools(debug = TRUE)
Trying to compile a simple C file
Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
using C compiler: ‘clang version 14.0.6’
using SDK: ‘’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c foo.c -o foo.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o foo.so foo.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: library 'System' not found
clang-14: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: foo.so] Error 1
Error: Could not find tools necessary to compile a package
Call pkgbuild::check_build_tools(debug = TRUE) to diagnose the problem.
Dear everyone,
It seems many people have the issues to install the package for Mac. Is there any easy or straightforward way to resolve this problems?
devtools::install_github('cole-trapnell-lab/monocle3')Using github PAT from envvar GITHUB_PAT. Use gitcreds::gitcreds_set() and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead. Downloading GitHub repo cole-trapnell-lab/monocle3@HEAD Error: Failed to install 'monocle3' from GitHub: Could not find tools necessary to compile a package Call
pkgbuild::check_build_tools(debug = TRUE)to diagnose the problem.pkgbuild::check_build_tools(debug = TRUE)Trying to compile a simple C file Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c using C compiler: ‘clang version 14.0.6’ using SDK: ‘’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c foo.c -o foo.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o foo.so foo.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: library 'System' not found clang-14: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: foo.so] Error 1 Error: Could not find tools necessary to compile a package Callpkgbuild::check_build_tools(debug = TRUE)to diagnose the problem.