colinsheppard instream-sd issues

colinsheppard / instream-sd

InSTREAM SD

0 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Experiment manager does not accept "NONE" as instance name for reach input files.

#62 SFRailsback opened 8 years ago
0
Make redd summary output file in .csv format: [TroutModelSwarm.m openReddSummaryFilePtr] and [UTMRedd.m createReddSummaryStr]

#61 SFRailsback closed 9 years ago
2
Time series input manager seg faults on hourly .csv files that end with a blank line.

#60 SFRailsback closed 9 years ago
0
Revise HabitatSpace checkHabitatParams to separate Model setup and habitat params.

#59 SFRailsback opened 9 years ago
1
Redd scour function is out of date and wrong: does not produce all-or-none survival.

#58 SFRailsback closed 9 years ago
0
Redd output file does not conform to overwrite conventions of live fish and dead fish output files.

#57 SFRailsback closed 10 years ago
0
TroutModelSwarm.m: Age symbol list (and maybe other symbols) are created twice: in instantiateObjects and buildObjects

#56 SFRailsback closed 9 years ago
0
Implement individualFishReport: copy from inStream 5.

#55 SFRailsback closed 10 years ago
0
Implement fileOutputFrequency to reduce output calculations and file size

#54 SFRailsback closed 10 years ago
0
Revise Algorithm for Finding Neighboring Cells

#53 colinsheppard closed 9 years ago
0
TSInputMan

#52 colinsheppard closed 10 years ago
1
Fix bug in TimeManager isTimeT: betweenMMDD: . See inSALMO-FA issue #3.

#51 SFRailsback closed 10 years ago
0
Memory leak testing... especially, dropping stuff at end of run.

#50 SFRailsback closed 9 years ago
0
Add LFT output

#49 SFRailsback closed 11 years ago
0
TimeSeriesInputManager doesn't read Sci. notation correctly in .csv files. It reads "3.0E-10" correctly in tab-separated, not csv.

#48 SFRailsback closed 10 years ago
0
Execution slows down over time

#47 SFRailsback closed 11 years ago
1
make shear parameters habitat, not fish

#46 SFRailsback closed 11 years ago
1
Deal with fileOutputFrequency: make it work or get rid of it.

#45 SFRailsback closed 11 years ago
0
Deal with Year Shuffler- make it work or drop it.

#44 SFRailsback closed 11 years ago
0
crash on Trout::move

#43 colinsheppard closed 11 years ago
0
HabitatManager has stuff about reachFlow, reachVelocityFile, reachDepthFile --- unused I think.

#42 SFRailsback closed 11 years ago
1
No angling or hooking mortality

#41 SFRailsback closed 11 years ago
1
in trout moveTo: , there is reference to habitatSpace before the fish has moved to its new reach if it does.

#40 SFRailsback closed 11 years ago
1
getPiscivorousFishDensity is always zero in survival mgr test output

#39 SFRailsback closed 11 years ago
0
Code to update depth and vel is in both UTMCell and FishCell; use interpolator index to speed update

#38 SFRailsback closed 11 years ago
0
Git rid of ZoneAllocMapper

#37 SFRailsback closed 11 years ago
0
Fish switch drift vs. search feeding at moveTo: bestDest

#36 SFRailsback closed 11 years ago
1
Speed up InterpolationTable by having it remember the last input and output, and return the last output if the new input is the same.

#35 SFRailsback closed 11 years ago
0
Maximum intake is not implemented correctly--compared doc. to calcSearchFoodIntakeAt: and calcDriftFoodIntakeAt:

#34 SFRailsback closed 11 years ago
1
CSV input files not read correctly--update TimeSeriesInputManager

#33 SFRailsback closed 11 years ago
0
Why doesn't modelSwarm have cmaxInterpolatorMap, spawnDepth/VelocityInterpolatorMap?

#32 SFRailsback closed 11 years ago
0
Crash on creation of new fish by redds. Likely related to issue #30.

#31 SFRailsback closed 11 years ago
2
Stocking events cause crash.

#30 SFRailsback closed 11 years ago
1
CMax and StandardResp can now vary among destination cells--recalc for cells in other reaches. See trout moveToMax

#29 SFRailsback closed 11 years ago
0
ReddScourFunc updateWith: does not respond to input method

#28 SFRailsback closed 11 years ago
0
Nil receiver for drop, at end of model run.

#27 SFRailsback closed 11 years ago
0
CellFishInfo gets date wrong on 2nd day

#26 SFRailsback closed 11 years ago
0
CellFishInfo will not break out by age class.

#25 SFRailsback closed 11 years ago
0
Redd superimposition is commented out.

#24 SFRailsback closed 11 years ago
0
Scouring is commented out.

#23 SFRailsback closed 11 years ago
0
Cell colors not being updated.

#22 SFRailsback closed 11 years ago
1
Put in new BreakoutReporter with csv output

#21 SFRailsback closed 11 years ago
0
Put in new time series input manager so .csv files work.

#20 SFRailsback closed 11 years ago
1
Fix predacious fish density-- very likely messed up.

#19 SFRailsback closed 11 years ago
1
Remove speedup junk in - move, that separates cells with high vs. low velocity.

#18 SFRailsback closed 11 years ago
0
ReachEnd variables not in input or in cell probes. Also probe hiding cover avail. and tagCell#.

#17 SFRailsback closed 11 years ago
0
Cell hiding cover doesn't seem to be initialized.

#16 SFRailsback closed 11 years ago
0
tag fish color is not set

#15 SFRailsback closed 11 years ago
0
Mortality graph not working

#14 SFRailsback closed 11 years ago
0
Depth (and vel?) shading not right

#13 SFRailsback closed 11 years ago
0