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collaborative-open-plant-omics / COPO

Collaborative Open Plant Omics
MIT License
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[Snyk] Fix for 29 vulnerabilities #181

Closed copobot closed 1 year ago

copobot commented 2 years ago

This PR was automatically created by Snyk using the credentials of a real user.


Snyk has created this PR to fix one or more vulnerable packages in the `pip` dependencies of this project.

#### Changes included in this PR - Changes to the following files to upgrade the vulnerable dependencies to a fixed version: - requirements/base.txt
⚠️ Warning ``` tables 3.5.2 requires numexpr, which is not installed. tables 3.5.2 requires numpy, which is not installed. requests 2.20.0 has requirement urllib3<1.25,>=1.21.1, but you have urllib3 1.26.5. pandas 0.24.2 requires numpy, which is not installed. notebook 5.7.16 requires pyzmq, which is not installed. jupyter 1.0.0 requires jupyter-console, which is not installed. jupyter-client 5.3.3 requires pyzmq, which is not installed. ipython 5.10.0 requires simplegeneric, which is not installed. ipython 5.10.0 has requirement prompt-toolkit<2.0.0,>=1.0.4, but you have prompt-toolkit 2.0.10. django-gollum 1.0.1 requires django, which is not installed. django-cors-headers 3.0.2 requires Django, which is not installed. django-appconf 1.0.3 requires django, which is not installed. django-allauth 0.51.0 requires Django, which is not installed. channels 2.1.3 requires Django, which is not installed. channels 2.1.3 has requirement asgiref~=2.3, but you have asgiref 3.2.2. channels-redis 2.3.2 requires aioredis, which is not installed. channels-redis 2.3.2 has requirement msgpack~=0.5.2, but you have msgpack 0.6.2. channels-redis 2.3.2 has requirement asgiref~=2.1, but you have asgiref 3.2.2. botocore 1.12.178 has requirement urllib3<1.26,>=1.20; python_version == "2.7", but you have urllib3 1.26.5. biopython 1.73 requires numpy, which is not installed. ```
#### Vulnerabilities that will be fixed ##### By pinning: Severity | Priority Score (*) | Issue | Upgrade | Breaking Change | Exploit Maturity :-------------------------:|-------------------------|:-------------------------|:-------------------------|:-------------------------|:------------------------- ![low severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/l.png "low severity") | **369/1000**
**Why?** Has a fix available, CVSS 3.1 | Directory Traversal
[SNYK-PYTHON-DJANGO-1066259](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-1066259) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![low severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/l.png "low severity") | **379/1000**
**Why?** Has a fix available, CVSS 3.3 | Directory Traversal
[SNYK-PYTHON-DJANGO-1279042](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-1279042) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **579/1000**
**Why?** Has a fix available, CVSS 7.3 | HTTP Header Injection
[SNYK-PYTHON-DJANGO-1290072](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-1290072) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **589/1000**
**Why?** Has a fix available, CVSS 7.5 | Directory Traversal
[SNYK-PYTHON-DJANGO-1298665](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-1298665) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **509/1000**
**Why?** Has a fix available, CVSS 5.9 | Uncontrolled Memory Consumption
[SNYK-PYTHON-DJANGO-173679](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-173679) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![low severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/l.png "low severity") | **334/1000**
**Why?** Has a fix available, CVSS 2.4 | Cross-site Scripting (XSS)
[SNYK-PYTHON-DJANGO-174885](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-174885) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Access Restriction Bypass
[SNYK-PYTHON-DJANGO-2312875](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2312875) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![low severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/l.png "low severity") | **399/1000**
**Why?** Has a fix available, CVSS 3.7 | Directory Traversal
[SNYK-PYTHON-DJANGO-2329158](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2329158) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![low severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/l.png "low severity") | **399/1000**
**Why?** Has a fix available, CVSS 3.7 | Information Exposure
[SNYK-PYTHON-DJANGO-2329159](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2329159) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Denial of Service (DoS)
[SNYK-PYTHON-DJANGO-2329160](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2329160) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **424/1000**
**Why?** Has a fix available, CVSS 4.2 | Cross-site Scripting (XSS)
[SNYK-PYTHON-DJANGO-2389002](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2389002) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Denial of Service (DoS)
[SNYK-PYTHON-DJANGO-2389021](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2389021) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **624/1000**
**Why?** Has a fix available, CVSS 8.2 | SQL Injection
[SNYK-PYTHON-DJANGO-2606966](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2606966) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **731/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 8.2 | SQL Injection
[SNYK-PYTHON-DJANGO-2606969](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2606969) | `django:`
`2.1.4 -> 3.2.15`
| No | Proof of Concept ![critical severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/c.png "critical severity") | **776/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 9.1 | SQL Injection
[SNYK-PYTHON-DJANGO-2940618](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2940618) | `django:`
`2.1.4 -> 3.2.15`
| No | Proof of Concept ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **564/1000**
**Why?** Has a fix available, CVSS 7 | Reflected File Download (RFD)
[SNYK-PYTHON-DJANGO-2968205](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-2968205) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **579/1000**
**Why?** Has a fix available, CVSS 7.3 | Man-in-the-Middle (MitM)
[SNYK-PYTHON-DJANGO-451300](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-451300) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Denial of Service (DoS)
[SNYK-PYTHON-DJANGO-456540](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-456540) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Denial of Service (DoS)
[SNYK-PYTHON-DJANGO-456541](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-456541) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Denial of Service (DoS)
[SNYK-PYTHON-DJANGO-456542](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-456542) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | SQL Injection
[SNYK-PYTHON-DJANGO-456566](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-456566) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **529/1000**
**Why?** Has a fix available, CVSS 6.3 | Privilege Escalation
[SNYK-PYTHON-DJANGO-536439](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-536439) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **429/1000**
**Why?** Has a fix available, CVSS 4.3 | Content Spoofing
[SNYK-PYTHON-DJANGO-72888](https://snyk.io/vuln/SNYK-PYTHON-DJANGO-72888) | `django:`
`2.1.4 -> 3.2.15`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **586/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 5.3 | NULL Pointer Dereference
[SNYK-PYTHON-LXML-2940874](https://snyk.io/vuln/SNYK-PYTHON-LXML-2940874) | `lxml:`
`4.6.5 -> 4.9.1`
| No | Proof of Concept ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **599/1000**
**Why?** Has a fix available, CVSS 7.7 | HTTP Header Injection
[SNYK-PYTHON-URLLIB3-1014645](https://snyk.io/vuln/SNYK-PYTHON-URLLIB3-1014645) | `urllib3:`
`1.22 -> 1.26.5`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS)
[SNYK-PYTHON-URLLIB3-1533435](https://snyk.io/vuln/SNYK-PYTHON-URLLIB3-1533435) | `urllib3:`
`1.22 -> 1.26.5`
| No | No Known Exploit ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **794/1000**
**Why?** Mature exploit, Has a fix available, CVSS 7.3 | CRLF injection
[SNYK-PYTHON-URLLIB3-174323](https://snyk.io/vuln/SNYK-PYTHON-URLLIB3-174323) | `urllib3:`
`1.22 -> 1.26.5`
| No | Mature ![high severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/h.png "high severity") | **589/1000**
**Why?** Has a fix available, CVSS 7.5 | Improper Certificate Validation
[SNYK-PYTHON-URLLIB3-174464](https://snyk.io/vuln/SNYK-PYTHON-URLLIB3-174464) | `urllib3:`
`1.22 -> 1.26.5`
| No | No Known Exploit ![medium severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/m.png "medium severity") | **509/1000**
**Why?** Has a fix available, CVSS 5.9 | Authentication Bypass
[SNYK-PYTHON-URLLIB3-72681](https://snyk.io/vuln/SNYK-PYTHON-URLLIB3-72681) | `urllib3:`
`1.22 -> 1.26.5`
| No | No Known Exploit (*) Note that the real score may have changed since the PR was raised. Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded. Check the changes in this PR to ensure they won't cause issues with your project. ------------ **Note:** *You are seeing this because you or someone else with access to this repository has authorized Snyk to open fix PRs.* For more information: 🧐 [View latest project report](https://app.snyk.io/org/copobot/project/99889a96-c588-4f53-89b3-d64f86ae376f?utm_source=github&utm_medium=referral&page=fix-pr) 🛠 [Adjust project settings](https://app.snyk.io/org/copobot/project/99889a96-c588-4f53-89b3-d64f86ae376f?utm_source=github&utm_medium=referral&page=fix-pr/settings) 📚 [Read more about Snyk's upgrade and patch logic](https://support.snyk.io/hc/en-us/articles/360003891078-Snyk-patches-to-fix-vulnerabilities) [//]: # (snyk:metadata:{"prId":"29b3ba17-b07f-4a8b-a491-b80f959d9c8a","prPublicId":"29b3ba17-b07f-4a8b-a491-b80f959d9c8a","dependencies":[{"name":"django","from":"2.1.4","to":"3.2.15"},{"name":"lxml","from":"4.6.5","to":"4.9.1"},{"name":"urllib3","from":"1.22","to":"1.26.5"}],"packageManager":"pip","projectPublicId":"99889a96-c588-4f53-89b3-d64f86ae376f","projectUrl":"https://app.snyk.io/org/copobot/project/99889a96-c588-4f53-89b3-d64f86ae376f?utm_source=github&utm_medium=referral&page=fix-pr","type":"auto","patch":[],"vulns":["SNYK-PYTHON-DJANGO-1066259","SNYK-PYTHON-DJANGO-1279042","SNYK-PYTHON-DJANGO-1290072","SNYK-PYTHON-DJANGO-1298665","SNYK-PYTHON-DJANGO-173679","SNYK-PYTHON-DJANGO-174885","SNYK-PYTHON-DJANGO-2312875","SNYK-PYTHON-DJANGO-2329158","SNYK-PYTHON-DJANGO-2329159","SNYK-PYTHON-DJANGO-2329160","SNYK-PYTHON-DJANGO-2389002","SNYK-PYTHON-DJANGO-2389021","SNYK-PYTHON-DJANGO-2606966","SNYK-PYTHON-DJANGO-2606969","SNYK-PYTHON-DJANGO-2940618","SNYK-PYTHON-DJANGO-2968205","SNYK-PYTHON-DJANGO-451300","SNYK-PYTHON-DJANGO-456540","SNYK-PYTHON-DJANGO-456541","SNYK-PYTHON-DJANGO-456542","SNYK-PYTHON-DJANGO-456566","SNYK-PYTHON-DJANGO-536439","SNYK-PYTHON-DJANGO-72888","SNYK-PYTHON-LXML-2940874","SNYK-PYTHON-URLLIB3-1014645","SNYK-PYTHON-URLLIB3-1533435","SNYK-PYTHON-URLLIB3-174323","SNYK-PYTHON-URLLIB3-174464","SNYK-PYTHON-URLLIB3-72681"],"upgrade":[],"isBreakingChange":false,"env":"prod","prType":"fix","templateVariants":["pr-warning-shown","priorityScore"],"priorityScoreList":[369,379,579,589,509,334,479,399,399,479,424,479,624,731,776,564,579,479,479,479,479,529,429,586,599,479,794,589,509]}) --- **Learn how to fix vulnerabilities with free interactive lessons:** 🦉 [Directory Traversal](https://learn.snyk.io/lessons/directory-traversal/python/?loc=fix-pr) 🦉 [Directory Traversal](https://learn.snyk.io/lessons/directory-traversal/python/?loc=fix-pr) 🦉 [Directory Traversal](https://learn.snyk.io/lessons/directory-traversal/python/?loc=fix-pr) 🦉 [More lessons are available in Snyk Learn](https://learn.snyk.io/?loc=fix-pr)