collaborative-open-plant-omics / COPO

Collaborative Open Plant Omics
MIT License
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[Snyk] Security upgrade setuptools from 39.0.1 to 65.5.1 #188

Closed copobot closed 1 year ago

copobot commented 2 years ago

This PR was automatically created by Snyk using the credentials of a real user.


Snyk has created this PR to fix one or more vulnerable packages in the `pip` dependencies of this project.

#### Changes included in this PR - Changes to the following files to upgrade the vulnerable dependencies to a fixed version: - requirements/base.txt
⚠️ Warning ``` tables 3.5.2 requires numexpr, which is not installed. s3transfer 0.1.9 requires botocore, which is not installed. rdflib 4.2.1 requires SPARQLWrapper, which is not installed. mzml2isa 0.5.1 requires pronto, which is not installed. jupyter 1.0.0 requires jupyter-console, which is not installed. ipython 5.10.0 requires simplegeneric, which is not installed. ipython 5.10.0 has requirement prompt-toolkit<2.0.0,>=1.0.4, but you have prompt-toolkit 2.0.10. django-tools 0.39.0 requires lxml, which is not installed. django-tools 0.39.0 requires Django, which is not installed. django-cors-headers 3.0.2 requires Django, which is not installed. django-appconf 1.0.3 requires django, which is not installed. django-allauth 0.51.0 requires Django, which is not installed. channels 2.1.3 requires daphne, which is not installed. channels 2.1.3 requires Django, which is not installed. channels 2.1.3 has requirement asgiref~=2.3, but you have asgiref 3.2.2. channels-redis 2.3.2 requires aioredis, which is not installed. channels-redis 2.3.2 has requirement msgpack~=0.5.2, but you have msgpack 0.6.2. channels-redis 2.3.2 has requirement asgiref~=2.1, but you have asgiref 3.2.2. ```
#### Vulnerabilities that will be fixed ##### By pinning: Severity | Priority Score (*) | Issue | Upgrade | Breaking Change | Exploit Maturity :-------------------------:|-------------------------|:-------------------------|:-------------------------|:-------------------------|:------------------------- ![low severity](https://res.cloudinary.com/snyk/image/upload/w_20,h_20/v1561977819/icon/l.png "low severity") | **441/1000**
**Why?** Recently disclosed, Has a fix available, CVSS 3.1 | Regular Expression Denial of Service (ReDoS)
[SNYK-PYTHON-SETUPTOOLS-3113904](https://snyk.io/vuln/SNYK-PYTHON-SETUPTOOLS-3113904) | `setuptools:`
`39.0.1 -> 65.5.1`
| No | No Known Exploit (*) Note that the real score may have changed since the PR was raised. Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded. Check the changes in this PR to ensure they won't cause issues with your project. ------------ **Note:** *You are seeing this because you or someone else with access to this repository has authorized Snyk to open fix PRs.* For more information: 🧐 [View latest project report](https://app.snyk.io/org/copobot/project/99889a96-c588-4f53-89b3-d64f86ae376f?utm_source=github&utm_medium=referral&page=fix-pr) 🛠 [Adjust project settings](https://app.snyk.io/org/copobot/project/99889a96-c588-4f53-89b3-d64f86ae376f?utm_source=github&utm_medium=referral&page=fix-pr/settings) 📚 [Read more about Snyk's upgrade and patch logic](https://support.snyk.io/hc/en-us/articles/360003891078-Snyk-patches-to-fix-vulnerabilities) [//]: # (snyk:metadata:{"prId":"59951c03-2f0e-43aa-a5b3-13183043e5c9","prPublicId":"59951c03-2f0e-43aa-a5b3-13183043e5c9","dependencies":[{"name":"setuptools","from":"39.0.1","to":"65.5.1"}],"packageManager":"pip","projectPublicId":"99889a96-c588-4f53-89b3-d64f86ae376f","projectUrl":"https://app.snyk.io/org/copobot/project/99889a96-c588-4f53-89b3-d64f86ae376f?utm_source=github&utm_medium=referral&page=fix-pr","type":"auto","patch":[],"vulns":["SNYK-PYTHON-SETUPTOOLS-3113904"],"upgrade":[],"isBreakingChange":false,"env":"prod","prType":"fix","templateVariants":["updated-fix-title","pr-warning-shown","priorityScore"],"priorityScoreList":[441]}) --- **Learn how to fix vulnerabilities with free interactive lessons:** 🦉 [Regular Expression Denial of Service (ReDoS)](https://learn.snyk.io/lessons/redos/javascript/?loc=fix-pr)