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collaborativebioinformatics / STRdust

MIT License
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SURVIVOR and minimap2 scripts #10

Closed lfpaulin closed 3 years ago

lfpaulin commented 3 years ago

scripts to generate reads with survivor and mapping with minimap2

wdecoster commented 3 years ago

Is this ready to be merged?

One comment, for Straglr we need alignment with minimap2 -Y, so we probably need to do it twice.

lfpaulin commented 3 years ago

sure thing, I will add it to all instead of having two versions

wdecoster commented 3 years ago

I am not sure if that option affects other tools (e.g. SV calling)... so I don't know if we want to have it as a requirement for our tool