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colomemaria / epiAneufinder

R package to detect breakpoints and assign somies to scATAC-seq data
GNU General Public License v3.0
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Error: node stack overflow #5

Closed Laolga closed 1 year ago

Laolga commented 1 year ago

Hi! I've noticed that with some datasets the last step (heatmap creation) often crashes. If it's too time-consuming to fix, could you make this step optional?

akshaya4r commented 1 year ago

Hi Laolga! Thanks for the suggestion. We will do that! In the mean time, since the plotting is the last step, a crash here would not have affected the results file that was saved in the results folder. Hopefully you can use them for your analysis already.

thek71 commented 1 year ago

Hi Laolga,

We updated the main function. There is now the option to not plot the karyogram. Just set the plotKaryo to FALSE.