Closed kridsadakorn closed 4 years ago
Regarding the tutorial: https://nbviewer.jupyter.org/github/colomemaria/epiScanpy/blob/master/docs/tutorials/ATAC_bld_ct_mtx_tutorial.html
The bed file contains 4 columns
chr1 3120019 3122019 enhancer_3120019_3122019 chr1 3209819 3211819 enhancer_3209819_3211819 chr1 3292869 3294869 enhancer_3292869_3294869 chr1 3298619 3300619 enhancer_3298619_3300619 chr1 3309519 3311519 enhancer_3309519_3311519 chr1 3359619 3361619 enhancer_3359619_3361619 chr1 3398119 3400119 enhancer_3398119_3400119 chr1 3410669 3412669 enhancer_3410669_3412669 chr1 4138319 4140319 enhancer_4138319_4140319
For the bed file that contains 3 columns as like
chr1 10413 10625 chr1 13380 13624 chr1 16145 16354 chr1 96388 96812 chr1 115650 115812 chr1 237625 237888 chr1 240909 241193 chr1 521446 521676 chr1 540558 541085 chr1 713705 714611
It reports an error in function load_features
Solved
Please review the changes in load_features and name_features
Regarding the tutorial: https://nbviewer.jupyter.org/github/colomemaria/epiScanpy/blob/master/docs/tutorials/ATAC_bld_ct_mtx_tutorial.html
The bed file contains 4 columns
For the bed file that contains 3 columns as like
It reports an error in function load_features