Episcanpy seems to still use scanpy.api This will soon break episcanpy when scanpy removes the api module as announced.
This FutureWarning appears when importing scanpy:
>>> import episcanpy
/app/python37/lib/python3.7/site-packages/scanpy/api/__init__.py:6: FutureWarning:
In a future version of Scanpy, `scanpy.api` will be removed.
Simply use `import scanpy as sc` and `import scanpy.external as sce` instead.
FutureWarning,
Hi Anna, one more thing I noticed:
Episcanpy seems to still use
scanpy.api
This will soon break episcanpy when scanpy removes the api module as announced.This FutureWarning appears when importing scanpy: