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colomemaria / epiScanpy

Episcanpy: Epigenomics Single Cell Analysis in Python
BSD 3-Clause "New" or "Revised" License
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Can episcanpy transform scATAC-seq peak matrix into "Gene activity matrix"? #74

Closed xuebaliang closed 3 years ago

xuebaliang commented 3 years ago

Sometimes we need to collapse the single cell ATAC-seq peak matrix to a "gene activity matrix", as same as in seurat, I wish the episcanpy can also provide this function.

DaneseAnna commented 3 years ago

Hi,

Yes there is a function for it. It is epi.tl.geneactivity.