Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier for those who love hacking away at the command prompt.
Once Singularity images are built they should be deployed to Galaxy. Currently the images are loaded from WORKBENCH_ROOT/export/galaxy/database/container_cache/singularity/mulled/ which is a directory mounted into the Galaxy Docker container and thus not writeable by an ordinary user.
Ideally deployment should be done by the galaxy-configurator so that new images are installed when the Workbench starts up.
Once Singularity images are built they should be deployed to Galaxy. Currently the images are loaded from
WORKBENCH_ROOT/export/galaxy/database/container_cache/singularity/mulled/which is a directory mounted into the Galaxy Docker container and thus not writeable by an ordinary user.Ideally deployment should be done by the
galaxy-configuratorso that new images are installed when the Workbench starts up.