search

combogenomics / CONTIGuator

Bacterial genomes finishing tool for structural insights on draft genomes
http://contiguator.sourceforge.net/
GNU General Public License v3.0
22 stars 6 forks source link

Incorrect feature location in PseudoContig.embl #4

Closed mscook closed 12 years ago

mscook commented 12 years ago

For context (running the example from CONTIGuator source) -

... RN [1]
RX PUBMED; 21693004. RA Marco Galardini, Emanuele G Biondi, Marco Bazzicalupo, Alessio Mengoni; RT "CONTIGuator: a bacterial genomes finishing tool for structural insights on RT draft genomes"; RL Source Code for Biology and Medicine 2011, 6:11 doi:10.1186/1751-0473-6-11 XX FH Key Location/Qualifiers FT Contig 2..29168 ...

The first feature begins at 2. This is not correct.

I've seen this is other runs as well.

Cheers

Mitch

mgalardini commented 12 years ago

Ah, snap! I was aware of this bug but i was pretty sure it was fixed: i'll look into it, it shouldn't be that much of a problem.

mgalardini commented 12 years ago

It appears to be something caused by BioPython: i checked the position right before the embl file is written and it is correctly 1. I'll see if i can do something about it, otherwise i'll close the issue.