I am trying DuctApe with the tutorial dataset (smeliloti), and I couldn't pass the first step, since dape init failed to create the sqlite3 database
I'm using a xubuntu 22.04.4 LTS OS running on a Xeon Gold 6140 system, and I followed the installation instructions with conda (mamba) as per the tutorial.
Thanks!
$ dape init -n smeliloti
10:22:52 - Could not create the database!
10:22:52 - database is locked
10:22:52 - You can remove or rename the old project file
Traceback (most recent call last):
File "/home/bioinf/miniforge3/envs/ductape/bin/dape", line 1015, in <module>
touchProject(project)
File "/home/bioinf/miniforge3/envs/ductape/lib/python3.12/site-packages/ductape/actions.py", line 4832, in touchProject
proj = Project(project)
^^^^^^^^^^^^^^^^
File "/home/bioinf/miniforge3/envs/ductape/lib/python3.12/site-packages/ductape/storage/SQLite/database.py", line 126, in __init__
self.getProject()
File "/home/bioinf/miniforge3/envs/ductape/lib/python3.12/site-packages/ductape/storage/SQLite/database.py", line 154, in getProject
cursor = conn.execute('select * from project limit 1;')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
sqlite3.OperationalError: no such table: project
Hello.
I am trying DuctApe with the tutorial dataset (smeliloti), and I couldn't pass the first step, since
dape init
failed to create the sqlite3 databaseI'm using a xubuntu 22.04.4 LTS OS running on a Xeon Gold 6140 system, and I followed the installation instructions with conda (mamba) as per the tutorial.
Thanks!