mnergizci
commented
4 months ago Hi,
As the error suggests, it seems the necessary dependencies (like netcdf4 or h5netcdf) are not installed yet. Please try installing these libraries into your environment. You can use either pip or conda, depending on where you are using LiCSBAS:
You can use pip:
pip install netcdf4 h5netcdf
or conda:
conda install -c conda-forge netcdf4 h5netcdf
After downloading the dependencies, it might work properly...
suatcoskun
Hi: I use last version of the LiCSBAS (main). I tried to convert .h5 file to netCDF with LiCSBAS_out2nc.py. But i took this error message;
LiCSBAS_out2nc.py ver1.05 20240420 M.Lazecky LiCSBAS_out2nc.py -i TS_GEOCml1GACOSclip/cum.h5 Traceback (most recent call last): File "/home/suat/Downloads/LiCSBAS-main/bin/LiCSBAS_out2nc.py", line 361, in
sys.exit(main())
^^^^^^
File "/home/suat/Downloads/LiCSBAS-main/bin/LiCSBAS_out2nc.py", line 271, in main
cube = loadall2cube(cumfile)
^^^^^^^^^^^^^^^^^^^^^
File "/home/suat/Downloads/LiCSBAS-main/bin/LiCSBAS_out2nc.py", line 96, in loadall2cube
cum = xr.load_dataset(cumfile)
^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/suat/tools/miniforge/envs/licsbas/lib/python3.12/site-packages/xarray/backends/api.py", line 274, in load_dataset
with open_dataset(filename_or_obj, **kwargs) as ds:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/suat/tools/miniforge/envs/licsbas/lib/python3.12/site-packages/xarray/backends/api.py", line 547, in open_dataset
engine = plugins.guess_engine(filename_or_obj)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/suat/tools/miniforge/envs/licsbas/lib/python3.12/site-packages/xarray/backends/plugins.py", line 197, in guess_engine
raise ValueError(error_msg)
ValueError: found the following matches with the input file in xarray's IO backends: ['netcdf4', 'h5netcdf']. But their dependencies may not be installed, see:
https://docs.xarray.dev/en/stable/user-guide/io.html
https://docs.xarray.dev/en/stable/getting-started-guide/installing.html
Any advice thank you.