@csjalbert functions to fix

[csjalbert]

@csjalbert here is a list of functions that you're required to edit. Let @awbarclay or @csjalbert know if you have issues or questions. Reply to this issue with any questions or relevant information.

• [x] combine_conflicts
• [x] create_bayes_base
• [x] #11
• [x] create_bayes_mix
• [x] failure_rate
• [x] get_phenotypes
• [x] #13
• [ ] #2
• [x] read_biomark_qc
• [x] read_gtseq_qc
• [x] read_proj_geno
• [x] read_usat_qc
• [x] remove_alt_species

[csjalbert]

Done but leaving this as open until issues #13 and #2 are sorted out.