Open mr-c opened 2 years ago
and their location fields updated with a Galaxy URI
location
can be discovered via cwltool --print-deps ~/common-workflow-language/v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl or directly via cwltool.main.find_deps (see also cwltool.main.printdeps)
cwltool --print-deps ~/common-workflow-language/v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl
cwltool.main.find_deps
cwltool.main.printdeps
This is how Arvados does this https://github.com/arvados/arvados/blob/main/sdk/cwl/arvados_cwl/runner.py#L241
Probably could refactor that and we could pull it into cwltool with a callback for uploading
cwltool
and their
location
fields updated with a Galaxy URIcan be discovered via
cwltool --print-deps ~/common-workflow-language/v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl
or directly viacwltool.main.find_deps
(see alsocwltool.main.printdeps
)