common-workflow-lab / galaxy

Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.
https://www.commonwl.org
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Implement "inferred" CWL secondaryFiles. #67

Open jmchilton opened 7 years ago

jmchilton commented 7 years ago

This is required to make progress on #60. Probably the best way to do this is just to implement a cwltool function that will rewrite a job input to expand this out against a supplied tool or workflow. I'm not sure I the cwltool-foo to do that quickly though.