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common-workflow-lab / wdl-cwl-translator

A translator from WDL to CWL v1.2
Apache License 2.0
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WDL workflow output definitions with functions #159

Open mr-c opened 2 years ago

mr-c commented 2 years ago

https://github.com/broadinstitute/warp/blob/4dc972976cb0640e58321cd4746579a3fc0dee62/pipelines/broad/dna_seq/germline/variant_calling/VariantCalling.wdl#L205

  File "/home/michael/wdl2cwl/wdl2cwl/main.py", line 950, in get_cwl_task_outputs
    meta_name = item.info.expr.expr.name
AttributeError: 'Apply' object has no attribute 'expr'

The above exception was the direct cause of the following exception:
[…]
wdl2cwl.main.ConversionException: ../src/warp/pipelines/broad/dna_seq/germline/variant_calling/VariantCalling.wdl:205:23: 'Apply' object has no attribute 'expr'
mr-c commented 2 years ago

That particular example depends on implementing select_first from https://github.com/common-workflow-lab/wdl-cwl-translator/pull/161 (merged)