Open garyluu opened 5 years ago
Hello @garyluu. i can confirm the change in behaviour.
While investigating this I found some unrelated bugs, so thank you! https://github.com/common-workflow-language/schema_salad/pull/265 https://github.com/common-workflow-language/cwltool/pull/1152
Expected Behavior
cwl v1.0 file with json that was able to run before with cwltool 1.0.20181217162649 should be able to be run with cwltool 1.0.20190621234233 . The secondary files are missing but still ran sucessfully before
Actual Behavior
Workflow Code
Workflow: https://github.com/dockstore/dockstore/blob/develop/dockstore-client/src/test/resources/directory/1st-workflow-no-secondary-in-workflow.cwl JSON: https://github.com/dockstore/dockstore/blob/develop/dockstore-client/src/test/resources/directory/1st-workflow-job.json
Full Traceback
Your Environment