Open mr-c opened 6 years ago
./run_test.sh RUNNER=cwltool EXTRA="--provenance $PWD/RO_test" -n55
to run a single test
To debug a single test, adapt the command that is run. For example:
/home/mcrusoe/cwltool/env3/bin/cwltool --provenance /home/mcrusoe/common-workflow-language/RO_test --outdir=/tmp/tmpxn1z84do 'v1.0/search.cwl#main' v1.0/search-job.json
I would
cd v1.0
cwltool --provenance RO_test --debug 'v1.0/search.cwl#main' v1.0/search-job.json
and, if need be,
pip install ipdb
ipdb $(which cwltool) --provenance RO_test --debug 'v1.0/search.cwl#main' v1.0/search-job.json
./run_test.sh RUNNER=cwltool EXTRA="--provenance $PWD/RO_test"
to ci.commonwl.org or maybeseq 1 133 | parallel ./run_test.sh RUNNER=cwltool EXTRA=\"--provenance $PWD/ro_test/RO_{#}\" -n{#}
? Bonus: Check packed workflows for anyfile:///
references that slipped through"@id": "urn:uuid:8238136c-4736-44a2-a6cc-16fbc789fdd8"
in the output records[x] 90 "Test file literal as input"
[x] 120 "Test file literal as input without Docker"
[x] 190 "Pipe to stdin from literal File via a Directory literal"
[x] 191 "Test non-stdin reference to literal File via a Directory literal"
[x] 118 "Test empty writable dir with InitialWorkDirRequirement inside Docker"
[x] 55 "Test InitialWorkDirRequirement linking input files and capturing secondaryFiles on input and output. Also tests the use of a variety of parameter references and expressions in the secondaryFiles field. "
size: 0
missing, maybe a serialization error?From CWL v1.1 conformance tests
[ ] 234 "symlink to file inside of working directory should be retrieved"
[ ] 236 "inplace update has side effect on directory content"
[ ] 242 "Test that default behavior is 'no_listing' if not specified"
[ ] 243 "Test that 'listing' is not present when LoadListingRequirement is 'no_listing'"
[ ] 244 "Test that 'listing' is not present when loadListing on input parameter is 'no_listing'"
[ ] 245 "Test that 'listing' is present in top directory object but not subdirectory object when LoadListingRequirement is 'shallow_listing'"
[ ] 246 "Test that 'listing' is present in top directory object but not subdirectory object when loadListing on input parameter loadListing is 'shallow_listing'"