Open mr-c opened 5 years ago
This is mostly for @tetron
diff --git a/cwltool/update.py b/cwltool/update.py index 9e79b98a..495d2c19 100644 --- a/cwltool/update.py +++ b/cwltool/update.py @@ -133,7 +44,7 @@ DEVUPDATES = { ALLUPDATES = UPDATES.copy() ALLUPDATES.update(DEVUPDATES) -LATEST = u"v1.0" +LATEST = u"v1.1.0-dev1"
$ cwltool --debug tests/wf/scatter-wf4.cwl tests/wf/scatter-job2.json Resolved 'tests/wf/scatter-wf4.cwl' to 'file:///home/mcrusoe/cwltool/tests/wf/scatter-wf4.cwl' Validation exception Tool definition file:///home/mcrusoe/cwltool/tests/wf/scatter-wf4.cwl#echo failed validation: tests/wf/scatter-wf4.cwl:4:3: checking object `tests/wf/scatter-wf4.cwl#echo` tests/wf/scatter-wf4.cwl:6:3: checking field `requirements` tests/wf/scatter-wf4.cwl:1:1: checking item tests/wf/scatter-wf4.cwl:6:3: Field `class` contains undefined reference to `file:///home/mcrusoe/cwltool/tests/wf/NetworkAccess` Traceback (most recent call last): File "/home/mcrusoe/cwltool/cwltool/workflow.py", line 619, in __init__ toolpath_object["run"], loadingContext) File "/home/mcrusoe/cwltool/cwltool/load_tool.py", line 372, in load_tool metadata=loadingContext.metadata) File "/home/mcrusoe/cwltool/cwltool/load_tool.py", line 284, in validate_document workflowobj, fileuri, checklinks=do_validate) File "/home/mcrusoe/cwltool/env3/lib/python3.6/site-packages/schema_salad/ref_resolver.py", line 919, in resolve_all self.validate_links(document, u"", all_doc_ids) File "/home/mcrusoe/cwltool/env3/lib/python3.6/site-packages/schema_salad/ref_resolver.py", line 1091, in validate_links raise errors[0]
I dug into this a bit, seems the metadata has (correctly) the original cwlVersion but while instantiating the WorkflowSteps the revised cwlVersion isn't available.
cwlVersion
WorkflowStep
@tetron What do you suggest?
This is mostly for @tetron