[WIP] Tests and name convention for the files maintained by THE UNIVERSITY OF MELBOURNE

common-workflow-library / legacy

Deprecated

https://github.com/common-workflow-library/bio-cwl-tools

Apache License 2.0

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[WIP] Tests and name convention for the files maintained by THE UNIVERSITY OF MELBOURNE #46

Closed FarahZKhan closed 8 years ago

FarahZKhan commented 8 years ago

These files has to be changed, the filenames has to have either picard- or GATK- prefix depends on the tool, and pass --conformance-test for this PR to be accepted

[x] GATK-BaseRecalibrator.cwl
[x] GATK-HaplotypeCaller.cwl
[x] GATK-IndelRealigner.cwl
[x] GATK-PrintReads.cwl
[x] GATK-RealignTargetCreator.cwl
[x] picard-BuildBamIndex.cwl
[x] picard-SortSam.cwl
[X] picard-MarkDuplicates.cwl
[x] picard-MergeSamFiles.cwl