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common-workflow-library / legacy

Deprecated
https://github.com/common-workflow-library/bio-cwl-tools
Apache License 2.0
100 stars 62 forks source link

SPP tool wrapping the run_spp.R script used in ENCODE #86

Closed alexbarrera closed 8 years ago

alexbarrera commented 8 years ago

This CWL tool wraps a wrapper script run_spp.R (https://github.com/crazyhottommy/phantompeakqualtools) which executes the R package SPP (https://github.com/hms-dbmi/spp). It is specifically designed for the analysis of Chip-Seq data from Illumina.

Quoting the phantompeakqualtools website, one typically usage of this package is:

Determine strand cross-correlation peak / predominant fragment length OR print out quality measures

mr-c commented 8 years ago

Looks great, thanks!